- Basic information
- CohesinDB ID: CDBP00414154
- Locus: chr21-18495912-18496938
-
Data sourse: GSE126634, GSE152721
-
Cell type: HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 97%,
"5_TxWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CHD8, FOXA2, NKX2-2, EZH2phosphoT487, SS18, NME2, GTF2B, DUX4, MAFF, FOXA1, SMARCC1, ZNF19, RELA, NEUROD1, CHD7, GRHL3, ARNT, OTX2, STAT3, TAL1, NKX3-1, WDR5, SETDB1, NUP98-HOXA9, TCF12, EP300, SPI1, REST, HSF1, SMC1, PDX1
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 16
- Related genes and loops
- Related gene:
ENSG00000154646,
- Related loop:
chr21:17925000-17950000~~chr21:18475000-18500000,
chr21:18000000-18025000~~chr21:18500000-18525000,
chr21:18175000-18200000~~chr21:18500000-18525000,
chr21:18225000-18250000~~chr21:18500000-18525000,
chr21:18275000-18300000~~chr21:18475000-18500000,
chr21:18275000-18300000~~chr21:18500000-18525000,
chr21:18375000-18400000~~chr21:18475000-18500000,
chr21:18375000-18400000~~chr21:18500000-18525000,
chr21:18387505-18389165~~chr21:18498641-18500962,
chr21:18419659-18421346~~chr21:18497725-18500889,
chr21:18475000-18500000~~chr21:20875000-20900000,
chr21:18475000-18500000~~chr21:20950000-20975000,
chr21:18498149-18500956~~chr21:18950806-18953065,
chr21:18499328-18500749~~chr21:18950898-18953042,
chr21:18500000-18525000~~chr21:18600000-18625000,
chr21:18500000-18525000~~chr21:18625000-18650000,
chr21:18500000-18525000~~chr21:18700000-18725000,
chr21:18500000-18525000~~chr21:18775000-18800000,
chr21:18500000-18525000~~chr21:18800000-18825000,
chr21:18500000-18525000~~chr21:18825000-18850000,
chr21:18500000-18525000~~chr21:18900000-18925000,
chr21:18500000-18525000~~chr21:18925000-18950000,
chr21:18500000-18525000~~chr21:18950000-18975000,
chr21:18500000-18525000~~chr21:19100000-19125000,
chr21:18500000-18525000~~chr21:19250000-19275000,
chr21:18500000-18525000~~chr21:19275000-19300000,
chr21:18500000-18525000~~chr21:19300000-19325000,
chr21:18500000-18525000~~chr21:19350000-19375000,
chr21:18500000-18525000~~chr21:19375000-19400000,
chr21:18500000-18525000~~chr21:19500000-19525000,
chr21:18500000-18525000~~chr21:19825000-19850000,
chr21:18500000-18525000~~chr21:19875000-19900000,
chr21:18500000-18525000~~chr21:19900000-19925000,
chr21:18500000-18525000~~chr21:20025000-20050000,
chr21:18500000-18525000~~chr21:20425000-20450000,
chr21:18500000-18525000~~chr21:20550000-20575000,
chr21:18500000-18525000~~chr21:20600000-20625000,
chr21:18500000-18525000~~chr21:20875000-20900000,
chr21:18500000-18525000~~chr21:20950000-20975000,
chr21:18500000-18525000~~chr21:20975000-21000000,
chr21:18500000-18525000~~chr21:22775000-22800000,