- Basic information
- CohesinDB ID: CDBP00414158
- Locus: chr21-18521275-18523532
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Data sourse: ENCSR000BLD, GSE72082, GSE126634, ENCSR000BLY, ENCSR404BPV, GSE105028, GSE103477, GSE111537, GSE25021, GSE108869, ENCSR917QNE, ENCSR000BTU, GSE138405, GSE101921, GSE152721, GSE206145-NatGen2015, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR703TNG, GSE138105, GSE145327, GSE94872, GSE206145, GSE85526, ENCSR000ECE, ENCSR000EHX, GSE97394, GSE55407, ENCSR000BTQ, GSE129526, ENCSR000EDE, GSE126990, GSE50893, ENCSR000ECS, GSE131577
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Cell type: SLK, Liver, H9-hESC, RPE, GM2630, Fibroblast, HEKn, Ishikawa, HeLa-S3, H1-hESC, GM18951, SNYDER, SK-N-SH, HeLa-Tet-On, THP-1, HUES64, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Neurons-H1, HUVEC, HCAEC, GM19238, CNCC-WT33iPSC, OCI-AML-3, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 21% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.689
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 81%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RELA, ARNTL, SMARCA4, HIF1A, GATA1
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 17
- Related genes and loops
- Related gene:
ENSG00000154646,
- Related loop:
chr21:17650000-17675000~~chr21:18525000-18550000,
chr21:18000000-18025000~~chr21:18500000-18525000,
chr21:18175000-18200000~~chr21:18500000-18525000,
chr21:18225000-18250000~~chr21:18500000-18525000,
chr21:18275000-18300000~~chr21:18500000-18525000,
chr21:18375000-18400000~~chr21:18500000-18525000,
chr21:18500000-18525000~~chr21:18600000-18625000,
chr21:18500000-18525000~~chr21:18625000-18650000,
chr21:18500000-18525000~~chr21:18700000-18725000,
chr21:18500000-18525000~~chr21:18775000-18800000,
chr21:18500000-18525000~~chr21:18800000-18825000,
chr21:18500000-18525000~~chr21:18825000-18850000,
chr21:18500000-18525000~~chr21:18900000-18925000,
chr21:18500000-18525000~~chr21:18925000-18950000,
chr21:18500000-18525000~~chr21:18950000-18975000,
chr21:18500000-18525000~~chr21:19100000-19125000,
chr21:18500000-18525000~~chr21:19250000-19275000,
chr21:18500000-18525000~~chr21:19275000-19300000,
chr21:18500000-18525000~~chr21:19300000-19325000,
chr21:18500000-18525000~~chr21:19350000-19375000,
chr21:18500000-18525000~~chr21:19375000-19400000,
chr21:18500000-18525000~~chr21:19500000-19525000,
chr21:18500000-18525000~~chr21:19825000-19850000,
chr21:18500000-18525000~~chr21:19875000-19900000,
chr21:18500000-18525000~~chr21:19900000-19925000,
chr21:18500000-18525000~~chr21:20025000-20050000,
chr21:18500000-18525000~~chr21:20425000-20450000,
chr21:18500000-18525000~~chr21:20550000-20575000,
chr21:18500000-18525000~~chr21:20600000-20625000,
chr21:18500000-18525000~~chr21:20875000-20900000,
chr21:18500000-18525000~~chr21:20950000-20975000,
chr21:18500000-18525000~~chr21:20975000-21000000,
chr21:18500000-18525000~~chr21:22775000-22800000,
chr21:18525000-18550000~~chr21:18625000-18650000,
chr21:18525000-18550000~~chr21:18650000-18675000,
chr21:18525000-18550000~~chr21:18750000-18775000,
chr21:18525000-18550000~~chr21:18825000-18850000,
chr21:18525000-18550000~~chr21:18900000-18925000,
chr21:18525000-18550000~~chr21:18925000-18950000,
chr21:18525000-18550000~~chr21:18975000-19000000,
chr21:18525000-18550000~~chr21:19025000-19050000,
chr21:18525000-18550000~~chr21:19175000-19200000,
chr21:18525000-18550000~~chr21:19375000-19400000,
chr21:18525000-18550000~~chr21:19600000-19625000,
chr21:18525000-18550000~~chr21:19650000-19675000,
chr21:18525000-18550000~~chr21:19675000-19700000,
chr21:18525000-18550000~~chr21:19875000-19900000,
chr21:18525000-18550000~~chr21:20775000-20800000,
chr21:18525000-18550000~~chr21:20800000-20825000,
chr21:18525000-18550000~~chr21:20950000-20975000,