- Basic information
- CohesinDB ID: CDBP00414160
- Locus: chr21-18528693-18530012
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Data sourse: ENCSR404BPV, GSE206145, GSE206145-NatGen2015, GSE62063, ENCSR000EDE, ENCSR198ZYJ, GSE138105, GSE116344, GSE108869, ENCSR000ECS
-
Cell type: RPE, Fibroblast, RH4, Neurons-H1, SLK, HeLa-S3, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: NIPBL,SA1,Rad21,SA2,Mau2,SMC3
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 80%,
"7_Enh": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, POU2F2, FOXA2, NKX2-2, MYCN, CHD2, SMAD3, FOXA1, ZNF205, HOXB13, TWIST1, SMARCC1, ERG, PAX6, RELA, KDM1A, HOXC5, ASCL1, NEUROD1, JUNB, NFIC, MYC, SMARCA4, ATF3, CHD7, LHX2, PBX4, ARNT, RAD21, DAXX, OTX2, GATA3, SMC3, HIF1A, GABPA, TAL1, MAX, PBX3, STAT3, FOS, CDK8, ISL1, TP63, HAND2, MED1, CEBPB, MYOG, TEAD1, ETV1, PIAS1, CREB1, LMO2, TP53, NFKB1, MYOD1, JUN, TCF12, EP300, BAF155, AR, REST, GATA2, RFX5, ZHX1, FLI1, BRD4, JUND, TEAD4, MYF5, PDX1, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 11
- Related genes and loops
- Related gene:
- Related loop:
chr21:17650000-17675000~~chr21:18525000-18550000,
chr21:18000000-18025000~~chr21:18500000-18525000,
chr21:18175000-18200000~~chr21:18500000-18525000,
chr21:18225000-18250000~~chr21:18500000-18525000,
chr21:18275000-18300000~~chr21:18500000-18525000,
chr21:18375000-18400000~~chr21:18500000-18525000,
chr21:18500000-18525000~~chr21:18600000-18625000,
chr21:18500000-18525000~~chr21:18625000-18650000,
chr21:18500000-18525000~~chr21:18700000-18725000,
chr21:18500000-18525000~~chr21:18775000-18800000,
chr21:18500000-18525000~~chr21:18800000-18825000,
chr21:18500000-18525000~~chr21:18825000-18850000,
chr21:18500000-18525000~~chr21:18900000-18925000,
chr21:18500000-18525000~~chr21:18925000-18950000,
chr21:18500000-18525000~~chr21:18950000-18975000,
chr21:18500000-18525000~~chr21:19100000-19125000,
chr21:18500000-18525000~~chr21:19250000-19275000,
chr21:18500000-18525000~~chr21:19275000-19300000,
chr21:18500000-18525000~~chr21:19300000-19325000,
chr21:18500000-18525000~~chr21:19350000-19375000,
chr21:18500000-18525000~~chr21:19375000-19400000,
chr21:18500000-18525000~~chr21:19500000-19525000,
chr21:18500000-18525000~~chr21:19825000-19850000,
chr21:18500000-18525000~~chr21:19875000-19900000,
chr21:18500000-18525000~~chr21:19900000-19925000,
chr21:18500000-18525000~~chr21:20025000-20050000,
chr21:18500000-18525000~~chr21:20425000-20450000,
chr21:18500000-18525000~~chr21:20550000-20575000,
chr21:18500000-18525000~~chr21:20600000-20625000,
chr21:18500000-18525000~~chr21:20875000-20900000,
chr21:18500000-18525000~~chr21:20950000-20975000,
chr21:18500000-18525000~~chr21:20975000-21000000,
chr21:18500000-18525000~~chr21:22775000-22800000,
chr21:18525000-18550000~~chr21:18625000-18650000,
chr21:18525000-18550000~~chr21:18650000-18675000,
chr21:18525000-18550000~~chr21:18750000-18775000,
chr21:18525000-18550000~~chr21:18825000-18850000,
chr21:18525000-18550000~~chr21:18900000-18925000,
chr21:18525000-18550000~~chr21:18925000-18950000,
chr21:18525000-18550000~~chr21:18975000-19000000,
chr21:18525000-18550000~~chr21:19025000-19050000,
chr21:18525000-18550000~~chr21:19175000-19200000,
chr21:18525000-18550000~~chr21:19375000-19400000,
chr21:18525000-18550000~~chr21:19600000-19625000,
chr21:18525000-18550000~~chr21:19650000-19675000,
chr21:18525000-18550000~~chr21:19675000-19700000,
chr21:18525000-18550000~~chr21:19875000-19900000,
chr21:18525000-18550000~~chr21:20775000-20800000,
chr21:18525000-18550000~~chr21:20800000-20825000,
chr21:18525000-18550000~~chr21:20950000-20975000,