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Basic information

CohesinDB ID: CDBP00414162

Locus: chr21-18550220-18551111

Data sourse: GSE206145, ENCSR198ZYJ, ENCSR404BPV

Cell type: Neurons-H1, RPE

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SMC3,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: False Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 30% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 96%, "9_Het": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOSL1, TRP47, TOP2A, SOX2, ZBTB48, WT1, FOXA1, RELA, CREBBP, ATF3, SP140, PBX4, GRHL3, ATF4, STAT3, PAX5, FOS, MED1, CEBPG, CEBPB, ESRRA, CEBPD, PHOX2B, JUN, EP300, AR, GATA2, REST, IRF4, ZNF777, HOXA9, BRD4, FOXP1

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 24

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00414162