- Basic information
- CohesinDB ID: CDBP00414169
- Locus: chr21-18603256-18603658
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Data sourse: GSE152721, ENCSR198ZYJ, ENCSR404BPV
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Cell type: Neurons-H1, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 80%,
"7_Enh": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, MAFG, CEBPA, FOXA2, NKX2-2, NME2, MAFF, FOXA1, CDK9, HOXB13, ERG, RELA, ZNF90, NFKB2, MYC, SMARCA4, CHD7, ARNT, GRHL3, ATF2, GABPA, MAX, CDK8, MED1, TFAP2C, EZH2, C11orf30, GRHL2, NFKB1, PHOX2B, BRD2, NUP98-HOXA9, MAFK, AR, REST, IRF4, HSF1, BRD4, JUND, ZNF316
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops