- Basic information
- CohesinDB ID: CDBP00414181
- Locus: chr21-18717694-18718054
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Data sourse: ENCSR000BTQ, ENCSR703TNG, GSE76893, GSE72082
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: False
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 95%,
"9_Het": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NFIA, PGR, CBX1, FOXA2, LCORL, NKX2-2, SIN3A, TEAD4, DUX4, FOXA1, HOXB13, SMARCC1, ERG, RELA, CREBBP, ZXDC, NOTCH1, NFIC, MYC, SMARCA4, ONECUT1, RAD21, ISL1, NFIB, PBX4, ARNT, GATA3, GABPA, TAL1, STAT3, MAFB, NKX3-1, MAX, CDK8, FOXM1, NR3C1, ESRRA, TEAD1, TFAP2C, PIAS1, ESR1, TRPS1, TCF12, SPI1, NIPBL, EP300, BAF155, AR, HDAC2, GATA2, RXR, CTBP2, MBD2, FOXP1, CUX1, NR5A2, SMC3, PDX1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops