- Basic information
- CohesinDB ID: CDBP00414183
- Locus: chr21-18725661-18725975
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE97394, GSE72082, ENCSR000BKV, GSE105028, GSE206145, ENCSR000ECE, GSE68388, GSE83726, GSE103477, GSE111537, GSE25021, GSE108869, ENCSR000ECS, GSE55407
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Cell type: MCF-7, H1-hESC, RPE, RH4, HeLa-S3, H9-hESC, K-562, OCI-AML-3, THP-1, HuCC-T1, HUES64
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SMC3,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 85%,
"9_Het": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBFA2T2, CBX1, SMC1A, POU5F1, MYCN, SOX2, TEAD4, XBP1, SRF, RELA, MYC, ONECUT1, CTCFL, RAD21, OCA2, KLF9, ZNF334, CTCF, AR, BRD4, SMC1, SMC3
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops