- Basic information
- CohesinDB ID: CDBP00414186
- Locus: chr21-18743735-18744305
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Data sourse: ENCSR000EDE, GSE126634, ENCSR000ECS, ENCSR879KXD
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Cell type: K-562, HeLa-S3, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 95%,
"7_Enh": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MEF2C, RBFOX2, PBX2, TBP, SMARCC1, ATF3, SMARCA4, PBX4, SOX11, ATF4, STAT3, SMARCE1, FOS, CDK8, CEBPG, CEBPB, JUN, EP300, AR, TRIM24, BRD4, JUND, IRF9, MLLT1
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops