- Basic information
- CohesinDB ID: CDBP00414188
- Locus: chr21-18750441-18750899
-
Data sourse: GSE105028, GSE67783, GSE86191
-
Cell type: HCT-116, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 68%,
"9_Het": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, FOSL1, POU2F2, CHD8, MYCN, TOP2A, ZFX, XBP1, ZBTB48, WT1, TET2, RBFOX2, RELA, ATF3, MYC, RAD21, SP140, GRHL3, HIF1A, ETV6, NCOA3, TRIM28, ZNF680, OCA2, GRHL2, CTCF, SPI1, AR, REST, NOTCH3, BRD4, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops