- Basic information
- CohesinDB ID: CDBP00414191
- Locus: chr21-18756161-18756677
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Data sourse: GSE67783, GSE72082, GSE206145, ENCSR000EDE, GSE68388, GSE138105, GSE108869, ENCSR000ECS
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Cell type: MCF-7, RPE, SLK, HeLa-S3, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SMC1,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TFAP2C, FOS, DAXX
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: 3-hydroxy-1-methylpropylmercapturic_acid_levels_in_smokers
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops