- Basic information
- CohesinDB ID: CDBP00414200
- Locus: chr21-18800722-18802720
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, GSE126634, ENCSR000BLY, GSE105028, GSE111537, GSE25021, GSE108869, ENCSR917QNE, ENCSR000BTU, GSE138405, GSE76893, GSE101921, GSE152721, GSE112028, GSE138105, GSE116344, ENCSR703TNG, GSE106870, GSE145327, GSE94872, ENCSR000BLS, GSE206145, GSE85526, ENCSR000ECE, ENCSR000EHX, GSE97394, ENCSR000BTQ, GSE129526, GSE111913, ENCSR000EDE, GSE68388, GSE83726, GSE126990, GSE50893, ENCSR000ECS, GSE131577
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Cell type: RH4, GM2610, SLK, CVB-hiPSC, Liver, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, HEKn, Ishikawa, HeLa-S3, H1-hESC, SNYDER, GM2588, SK-N-SH, RT-112, HeLa-Tet-On, HUES64, MCF-7, Hela-Kyoto, HCT-116, HL-60, Hep-G2, MCF-10A, HUVEC, HCAEC, OCI-AML-3, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 23% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.667
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 95%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZBTB48, TRP47, SP140
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 33
- Related genes and loops
- Related gene:
ENSG00000154646,
- Related loop:
chr21:18275000-18300000~~chr21:18775000-18800000,
chr21:18275000-18300000~~chr21:18800000-18825000,
chr21:18375000-18400000~~chr21:18775000-18800000,
chr21:18375000-18400000~~chr21:18800000-18825000,
chr21:18500000-18525000~~chr21:18775000-18800000,
chr21:18500000-18525000~~chr21:18800000-18825000,
chr21:18775000-18800000~~chr21:19550000-19575000,
chr21:18800000-18825000~~chr21:18950000-18975000,
chr21:18800000-18825000~~chr21:19500000-19525000,
chr21:18800000-18825000~~chr21:23900000-23925000,
chr21:18800685-18802704~~chr21:19321159-19323544,