- Basic information
- CohesinDB ID: CDBP00414202
- Locus: chr21-18827796-18827966
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Data sourse: GSE62063
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Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 99%,
"9_Het": 1%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: U2AF2, RBM39, NONO
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000154646,
- Related loop:
chr21:18275000-18300000~~chr21:18800000-18825000,
chr21:18375000-18400000~~chr21:18800000-18825000,
chr21:18375000-18400000~~chr21:18825000-18850000,
chr21:18500000-18525000~~chr21:18800000-18825000,
chr21:18500000-18525000~~chr21:18825000-18850000,
chr21:18525000-18550000~~chr21:18825000-18850000,
chr21:18800000-18825000~~chr21:18950000-18975000,
chr21:18800000-18825000~~chr21:19500000-19525000,
chr21:18800000-18825000~~chr21:23900000-23925000,
chr21:18825000-18850000~~chr21:19025000-19050000,
chr21:18825000-18850000~~chr21:19100000-19125000,
chr21:18825000-18850000~~chr21:19175000-19200000,
chr21:18825000-18850000~~chr21:19300000-19325000,
chr21:18825000-18850000~~chr21:19875000-19900000,