- Basic information
- CohesinDB ID: CDBP00414209
- Locus: chr21-18901978-18903363
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Data sourse: GSE126634, GSE152721
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Cell type: HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 96%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, SOX2, CHD7, FOXA1, TAL1, PHOX2B
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops
- Related gene:
ENSG00000154646,
- Related loop:
chr21:17775000-17800000~~chr21:18875000-18900000,
chr21:18275000-18300000~~chr21:18900000-18925000,
chr21:18375000-18400000~~chr21:18900000-18925000,
chr21:18500000-18525000~~chr21:18900000-18925000,
chr21:18525000-18550000~~chr21:18900000-18925000,
chr21:18900000-18925000~~chr21:19600000-19625000,
chr21:18900000-18925000~~chr21:19675000-19700000,
chr21:18900000-18925000~~chr21:19725000-19750000,
chr21:18900000-18925000~~chr21:20950000-20975000,