- Basic information
- CohesinDB ID: CDBP00414212
- Locus: chr21-18913831-18914364
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE67783, GSE72082, GSE86191, GSE25021, GSE105028, ENCSR000ECE, GSE68388, GSE138105, GSE83726, GSE116344, GSE145327, GSE108869, GSE97394
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Cell type: MCF-7, H1-hESC, HCT-116, RH4, SLK, HeLa-S3, HUES64, HSPC, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 81%,
"9_Het": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, RUNX1, CBFA2T2, CHD8, ZSCAN5D, TOP2A, RAD21, ZFX, NCOR1, NOTCH3, JUN, OCA2, ARNT, GRHL3, ESR1, NFKB1, STAT3, CTCF, PRDM14, STAG1
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops