- Basic information
- CohesinDB ID: CDBP00414218
- Locus: chr21-18953966-18955054
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Data sourse: ENCSR198ZYJ, ENCSR404BPV
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Cell type: Neurons-H1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GATA6, ZBTB16, FOXA2, GATA4, HOXA9, BRD4, FOXA1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:18498149-18500956~~chr21:18950806-18953065,
chr21:18499328-18500749~~chr21:18950898-18953042,
chr21:18500000-18525000~~chr21:18925000-18950000,
chr21:18500000-18525000~~chr21:18950000-18975000,
chr21:18525000-18550000~~chr21:18925000-18950000,
chr21:18800000-18825000~~chr21:18950000-18975000,
chr21:18925000-18950000~~chr21:19375000-19400000,
chr21:18950000-18975000~~chr21:19175000-19200000,
chr21:18950000-18975000~~chr21:19250000-19275000,
chr21:18950000-18975000~~chr21:19275000-19300000,
chr21:18950000-18975000~~chr21:19475000-19500000,
chr21:18950000-18975000~~chr21:19500000-19525000,
chr21:18950000-18975000~~chr21:19825000-19850000,
chr21:18950000-18975000~~chr21:20000000-20025000,
chr21:18950000-18975000~~chr21:20025000-20050000,
chr21:18950000-18975000~~chr21:20425000-20450000,
chr21:18950000-18975000~~chr21:20550000-20575000,
chr21:18950000-18975000~~chr21:20875000-20900000,
chr21:18950724-18953125~~chr21:19506984-19508943,
chr21:18950733-18953097~~chr21:19507036-19509059,
chr21:18950914-18953029~~chr21:19321763-19323259,