- Basic information
- CohesinDB ID: CDBP00414231
- Locus: chr21-19120401-19121533
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Data sourse: GSE126634, GSE105028, GSE152721, GSE206145-NatGen2015, GSE97394, GSE64758
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Cell type: H1-hESC, Fibroblast, H9-hESC, HAP1, HUES64
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: NIPBL,SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 65%,
"9_Het": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, NANOG, POU5F1, SOX2, ZBTB48, TET2, KDM1A, BRG1, SMARCA4, CHD7, RAD21, SP140, MORC2, MAX, PAX5, TRIM28, TP53, GRHL2, SETDB1, TCF12, NIPBL, SP1, BCL11A, EP300, ASH2L, BRD4, BCOR, FOXP1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 28
- Related genes and loops