- Basic information
- CohesinDB ID: CDBP00414247
- Locus: chr21-19244570-19246391
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 62%,
"9_Het": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, PGR, CBX1, CHD8, SMC1A, POU5F1, ZNF263, MYCN, KDM4C, ZFX, CRY1, EBF1, CHD2, ZBTB48, WT1, STAT1, ZSCAN5A, TET2, SUZ12, KDM1A, RELA, ATF3, MYC, SMARCA4, SP140, ZFP36, GRHL3, HIF1A, ARNT, STAT3, TAL1, ZNF143, RCOR1, ZNF736, ARNTL, NR3C1, NCOA3, CREB1, ZMYM3, EZH2, TP53, OCA2, GRHL2, L3MBTL2, CTCF, AR, TAF1, E2F6, RBM25, HSF1, NOTCH3, HNRNPLL, BRD4, BCOR, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops