- Basic information
- CohesinDB ID: CDBP00414257
- Locus: chr21-19311026-19311352
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Data sourse: ENCSR000BLD, GSE101921, GSE25021, ENCSR000EDE
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Cell type: MCF-7, H1-hESC, HeLa-S3, MCF-10A
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"9_Het": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, FOS, JUNB, TRIM28, EGLN2, RAD21, STAG1, PBX4, HIF1A, KDM5B, JUN, ARNT, GATA3, FOXA1, STAT3, CTCF, GATA1, STAG2, HOXC5, ZNF19
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops