- Basic information
- CohesinDB ID: CDBP00414264
- Locus: chr21-19328199-19328556
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE86191
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Cell type: RPE, Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 95%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GATA2, ZBTB48, FOXA1, TET2, ZBTB33
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops
- Related gene:
ENSG00000154646,
- Related loop:
chr21:18275000-18300000~~chr21:19325000-19350000,
chr21:18500000-18525000~~chr21:19300000-19325000,
chr21:18800685-18802704~~chr21:19321159-19323544,
chr21:18825000-18850000~~chr21:19300000-19325000,
chr21:18950914-18953029~~chr21:19321763-19323259,
chr21:19300000-19325000~~chr21:20000000-20025000,
chr21:19300000-19325000~~chr21:20025000-20050000,
chr21:19300000-19325000~~chr21:20525000-20550000,
chr21:19300000-19325000~~chr21:20875000-20900000,
chr21:19321159-19323544~~chr21:20040110-20041964,
chr21:19321624-19323201~~chr21:20040107-20041944,
chr21:19321801-19323525~~chr21:19507255-19508484,
chr21:19325000-19350000~~chr21:19500000-19525000,
chr21:19325000-19350000~~chr21:20875000-20900000,