- Basic information
- CohesinDB ID: CDBP00414266
- Locus: chr21-19368814-19369366
-
Data sourse: GSE50893
-
Cell type: GM12891
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 92%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFATC3, YBX1, RUNX1, MEF2B, FOXA2, CEBPA, TOP2A, RUNX1T1, NME2, MTA2, GTF2B, FOXA1, CDK9, TRIM22, HNRNPK, ERG, KDM1A, MEF2A, TARDBP, CREBBP, NFKB2, MYC, RUNX3, ARNT, HIF1A, BATF3, GABPA, BATF, STAT3, TAL1, GATA1, IKZF1, JMJD1C, TEAD1, MYB, SMAD1, LMO2, ZNF217, SETDB1, CTCF, TCF12, BCL11A, KLF1, TBX21, SPI1, GATA6, ZBTB16, SIX2, ATF7, RAD51, IKZF2, BRD4, TCF3, RELB, NCOR2, ZNF24, MLLT1, RBPJ
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops