- Basic information
- CohesinDB ID: CDBP00414267
- Locus: chr21-19375386-19375774
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE206145-GSE177045, GSE67783
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Cell type: MCF-7, Fibroblast, HSPC, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 93%,
"9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZBTB48, TRP47, OGG1, SP140
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops
- Related gene:
- Related loop:
chr21:18500000-18525000~~chr21:19350000-19375000,
chr21:18500000-18525000~~chr21:19375000-19400000,
chr21:18525000-18550000~~chr21:19375000-19400000,
chr21:18925000-18950000~~chr21:19375000-19400000,
chr21:19375000-19400000~~chr21:19475000-19500000,
chr21:19375000-19400000~~chr21:19875000-19900000,
chr21:19375000-19400000~~chr21:20000000-20025000,
chr21:19375000-19400000~~chr21:20200000-20225000,
chr21:19375000-19400000~~chr21:20225000-20250000,
chr21:19375000-19400000~~chr21:20300000-20325000,
chr21:19375000-19400000~~chr21:20800000-20825000,