Deatailed information for cohesin site CDBP00414269
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- Basic information
- CohesinDB ID: CDBP00414269
- Locus: chr21-19399943-19400280
- Data sourse: GSE67783
- Cell type: HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 95%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: MAFG, GATA1, STAT5A, SOX6, ARID1B, TEAD4, MAFF, C11orf30, TAL1, PHOX2B, MAFK, EP300, ZNF316
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
- Related loop: chr21:18500000-18525000~~chr21:19375000-19400000, chr21:18525000-18550000~~chr21:19375000-19400000, chr21:18925000-18950000~~chr21:19375000-19400000, chr21:19375000-19400000~~chr21:19475000-19500000, chr21:19375000-19400000~~chr21:19875000-19900000, chr21:19375000-19400000~~chr21:20000000-20025000, chr21:19375000-19400000~~chr21:20200000-20225000, chr21:19375000-19400000~~chr21:20225000-20250000, chr21:19375000-19400000~~chr21:20300000-20325000, chr21:19375000-19400000~~chr21:20800000-20825000,
Tools:
- Assay
