- Basic information
- CohesinDB ID: CDBP00414282
- Locus: chr21-19493381-19494014
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Data sourse: ENCSR000BTU, GSE67783, ENCSR000BKV, GSE86191, GSE116868, GSE111913, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE38411
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Cell type: RPE, Fibroblast, HCT-116, MB157, Ishikawa, RT-112, K-562, BCBL-1, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"9_Het": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFATC3, TRP47, SMC1A, FOXA2, ZSCAN5D, KDM4C, ZBTB48, WT1, RBFOX2, ERG, RELA, OGG1, ATF3, MYC, CHAMP1, CTCFL, SP140, GRHL3, CBFB, FOXK2, STAT3, MAX, MAF1, ESR1, L3MBTL2, KLF16, TAF1, ZBTB40, E2F6, EGR1, RNF2, BRD4, AATF, EP400, NFYB, MLLT1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 13
- Related genes and loops