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Basic information

CohesinDB ID: CDBP00414286

Locus: chr21-19510597-19511062

Data sourse: ENCSR000BLD, GSE138405, GSE126634, GSE25021, GSE105028, ENCSR000ECE, GSE138105, GSE116344, GSE126990, GSE108869, GSE55407

Cell type: MCF-7, H1-hESC, Hela-Kyoto, RH4, THP-1, SLK, HeLa-S3, HAP1, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 3% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.900

Subunit: SA1,Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 26% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 90%, "9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NFATC3, MTA2, ZBTB33, TRIM22, HOXB13, ZNF384, MYC, ONECUT1, RAD21, PBX4, SKIL, BACH1, STAT3, NR2C1, IKZF1, NFE2, BACH2, ELF1, TRIM28, ZNF217, ZNF334, CTCF, SPI1, TBX21, DPF2, GATAD2B, ATF7, IKZF2, SMARCA5, CUX1, RELB, ZNF24, MLLT1, ZNF316

Target gene symbol (double-evidenced CRMs): TMPRSS15

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 4

Related genes and loops

Related gene: ENSG00000154646,

eachgene

Deatailed information for cohesin site CDBP00414286