- Basic information
- CohesinDB ID: CDBP00414287
- Locus: chr21-19512698-19513227
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 73%,
"9_Het": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, BCL6, PPARG, CHD8, MYCN, BRD1, SIN3A, ZFX, TEAD4, MTA2, POU4F2, ZBTB48, WT1, RELA, ASCL1, ATF3, SP140, ARNT, GRHL3, TAL1, GATA1, IKZF1, NR3C1, TRIM28, EZH2, ESR1, OCA2, GRHL2, CTCF, TCF12, BCL11A, AR, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops
- Related gene:
ENSG00000154646,
- Related loop:
chr21:18275000-18300000~~chr21:19500000-19525000,
chr21:18500000-18525000~~chr21:19500000-19525000,
chr21:18800000-18825000~~chr21:19500000-19525000,
chr21:18950000-18975000~~chr21:19500000-19525000,
chr21:18950724-18953125~~chr21:19506984-19508943,
chr21:18950733-18953097~~chr21:19507036-19509059,
chr21:19321801-19323525~~chr21:19507255-19508484,
chr21:19325000-19350000~~chr21:19500000-19525000,
chr21:19500000-19525000~~chr21:19600000-19625000,
chr21:19500000-19525000~~chr21:19675000-19700000,
chr21:19500000-19525000~~chr21:19775000-19800000,
chr21:19500000-19525000~~chr21:20425000-20450000,
chr21:19500000-19525000~~chr21:20550000-20575000,
chr21:19500000-19525000~~chr21:20875000-20900000,
chr21:19507043-19508857~~chr21:20040107-20041944,