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Basic information

CohesinDB ID: CDBP00414288

Locus: chr21-19513457-19513892

Data sourse: GSE67783, GSE86191

Cell type: HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 26% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 66%, "9_Het": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU2F2, BCL6, PPARG, CHD8, MYCN, BRD1, SIN3A, ZFX, TEAD4, MTA2, POU4F2, ZBTB48, WT1, RELA, ASCL1, ATF3, SP140, ARNT, GRHL3, TAL1, GATA1, IKZF1, NR3C1, TRIM28, EZH2, ESR1, OCA2, GRHL2, CTCF, TCF12, BCL11A, AR, SMC3, STAG1

Target gene symbol (double-evidenced CRMs): TMPRSS15

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000154646,

eachgene

Deatailed information for cohesin site CDBP00414288