Deatailed information for cohesin site CDBP00414289
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- Basic information
- CohesinDB ID: CDBP00414289
- Locus: chr21-19517791-19518026
- Data sourse: GSE62063
- Cell type: Ramos
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 97%,
"9_Het": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene: ENSG00000154646,
- Related loop: chr21:18275000-18300000~~chr21:19500000-19525000, chr21:18500000-18525000~~chr21:19500000-19525000, chr21:18800000-18825000~~chr21:19500000-19525000, chr21:18950000-18975000~~chr21:19500000-19525000, chr21:19325000-19350000~~chr21:19500000-19525000, chr21:19500000-19525000~~chr21:19600000-19625000, chr21:19500000-19525000~~chr21:19675000-19700000, chr21:19500000-19525000~~chr21:19775000-19800000, chr21:19500000-19525000~~chr21:20425000-20450000, chr21:19500000-19525000~~chr21:20550000-20575000, chr21:19500000-19525000~~chr21:20875000-20900000,
Tools:
- Assay
