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Basic information

CohesinDB ID: CDBP00414290

Locus: chr21-19523599-19524177

Data sourse: ENCSR000BTU, GSE138405, ENCSR000EDE, GSE138105, GSE116344, GSE108869, ENCSR000ECS

Cell type: Hela-Kyoto, RH4, SLK, Ishikawa, HeLa-S3

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 2% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.944

Subunit: SMC3,Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 26% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 80%, "9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: SKI, FOSL1, PGR, CEBPA, SOX2, ZNF534, GTF2B, SMAD3, MEF2C, ZNF823, SMARCC1, HOXC5, NEUROD1, ATF3, NFIC, JUNB, MYC, ISL1, RAD21, NRF1, PBX4, OTX2, GATA3, STAT3, MAX, FOXM1, FOS, CDK8, GATA1, HAND2, MED1, NR3C1, CEBPB, MYOG, TEAD1, MYB, ESR1, NFKB1, JUN, TCF12, EP300, BCL11A, SPI1, PAX3-FOXO1, GATA6, AR, PAX8, ZBTB7A, TRIM24, RFX5, ZHX1, DEK, JUND, BRD4, TEAD4

Target gene symbol (double-evidenced CRMs): TMPRSS15

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 6

Related genes and loops

Related gene: ENSG00000154646,

eachgene

Deatailed information for cohesin site CDBP00414290