- Basic information
- CohesinDB ID: CDBP00414298
- Locus: chr21-19565616-19566098
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, ENCSR000BLY, ENCSR404BPV, GSE105028, GSE103477, GSE111537, GSE25021, GSE108869, ENCSR917QNE, ENCSR000BTU, ENCSR000BKV, GSE138405, GSE101921, GSE152721, ENCSR198ZYJ, GSE138105, ENCSR703TNG, ENCSR879KXD, ENCSR000ECE, ENCSR000EHX, GSE97394, ENCSR000BTQ, ENCSR000EDE, GSE126990
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Cell type: MCF-7, H1-hESC, Hela-Kyoto, MCF-10A, Neurons-H1, SLK, Ishikawa, THP-1, HeLa-S3, HUES64, SK-N-SH, K-562, Liver, OCI-AML-3, HAP1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 8% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.822
- Subunit: SMC3,Rad21,SA2,SA1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 98%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: JUNB, ATF3, RAD21, STAG1, ESR1, JUND, BRD4, CTCF, FOXA1, CUX1, SMC1, ZBTB33, SMC3, JUN, FOS, STAG2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops