- Basic information
- CohesinDB ID: CDBP00414299
- Locus: chr21-19566762-19567511
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Data sourse: ENCSR703TNG, GSE25021, GSE76893
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL,SA1,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, SMC1A, FOXA2, NKX2-2, CTBP1, XBP1, ERF, FOXA1, HOXB13, HNF4G, ERG, HOXC5, RELA, CREBBP, ZXDC, AHR, ONECUT1, GR, RAD21, ARNT, GATA3, GABPA, NRIP1, NKX3-1, FOS, MED1, TLE3, NR3C1, CEBPB, PDX1, NCOA3, TEAD1, PIAS1, ESR1, NCOA1, GRHL2, NIPBL, BAF155, BCL11A, AR, GATA2, HSF1, ASH2L, CTBP2, BRD4, FOXP1, NCOA2, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops