- Basic information
- CohesinDB ID: CDBP00414302
- Locus: chr21-19593815-19594097
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Data sourse: ENCSR000BTQ, GSE72082, ENCSR703TNG, GSE25021, GSE116344
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Cell type: MCF-7, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 90%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NCOA2, PGR, CBX1, FOXA2, SIN3A, FOXA1, HOXB13, CREBBP, ZXDC, RAD21, PBX4, ARNT, HIF1A, GRHL3, GATA3, GABPA, STAT3, NRIP1, TLE3, KLF4, CEBPB, NCOA3, TFAP2C, TCF7L2, ZNF217, ESR1, GRHL2, ZNF334, TCF12, EP300, BCL11A, AR, GATA2, MBD2, TEAD4, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops