Browse_each

Basic information

CohesinDB ID: CDBP00414303

Locus: chr21-19602619-19603272

Data sourse: GSE116344, GSE83726

Cell type: RH4

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 26% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 91%, "9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NANOG, CBX1, MYCN, SIN3A, ZFX, FOXA1, HOXB13, HNF4G, ERG, TFAP4, RELA, CREBBP, NFIC, ISL1, RAD21, PBX4, NFIB, OTX2, GATA3, FOXM1, NKX3-1, GATA1, HAND2, MED1, VDR, TLE3, HDAC3, ESRRA, NR3C1, TEAD1, CREB1, PIAS1, ESR1, MYOD1, PHOX2B, NIPBL, BAF155, EP300, AR, GATA2, ARID1A, ASH2L, FOXP1, TEAD4, TBX2

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 9

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00414303