- Basic information
- CohesinDB ID: CDBP00414304
- Locus: chr21-19604659-19605726
-
Data sourse: GSE116344, GSE126634, GSE152721, GSE62063
-
Cell type: RH4, HAP1, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: NIPBL,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 82%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NANOG, POU5F1, CREB1, SOX2, CHD7, TP53, NCOA1, FOXA1, MYOD1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 24
- Related genes and loops
- Related gene:
- Related loop:
chr21:18525000-18550000~~chr21:19600000-19625000,
chr21:18900000-18925000~~chr21:19600000-19625000,
chr21:19100000-19125000~~chr21:19600000-19625000,
chr21:19500000-19525000~~chr21:19600000-19625000,
chr21:19575000-19600000~~chr21:19775000-19800000,
chr21:19600000-19625000~~chr21:19775000-19800000,
chr21:19600000-19625000~~chr21:19875000-19900000,
chr21:19600000-19625000~~chr21:19900000-19925000,
chr21:19600000-19625000~~chr21:20000000-20025000,
chr21:19600000-19625000~~chr21:20025000-20050000,
chr21:19600000-19625000~~chr21:20425000-20450000,
chr21:19600000-19625000~~chr21:20550000-20575000,
chr21:19600000-19625000~~chr21:20875000-20900000,
chr21:19600000-19625000~~chr21:20950000-20975000,