Browse_each

Basic information

CohesinDB ID: CDBP00414306

Locus: chr21-19620878-19621155

Data sourse: ENCSR000BTQ, GSE72082, GSE76893, ENCSR703TNG, GSE25021

Cell type: MCF-7

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: SA1,Rad21,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 26% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 92%, "9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, CEBPA, TOP2A, SIN3A, TEAD4, CTBP1, GTF2B, FOXA1, HOXB13, ERG, RELA, ZXDC, CREBBP, MYC, RUNX2, GATA4, RAD21, GRHL3, HIF1A, PBX4, NKX2-1, GATA3, GABPA, FOXM1, NRIP1, NR3C1, ESRRA, CEBPB, NCOA3, TEAD1, TFAP2C, NR2F1, TCF7L2, ESR1, GRHL2, TRPS1, TCF12, BCL11A, NIPBL, EP300, AR, DPF2, HDAC2, CTBP2, BRD4, NCOA2, STAG1, AHR

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00414306