Deatailed information for cohesin site CDBP00414314
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- Basic information
- CohesinDB ID: CDBP00414314
- Locus: chr21-19684296-19684858
- Data sourse: GSE67783
- Cell type: HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 70%,
"9_Het": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: NFATC3, CHD8, ZSCAN5D, POU5F1, ZFX, POU4F2, MTA2, XBP1, ZBTB48, ZSCAN5A, ERG, YY1, RELA, HDGF, TARDBP, BMI1, ATF3, SMARCA4, RAD21, SP140, MAX, GATA1, IKZF1, MED1, NR2F1, ESR1, OCA2, CTCF, BHLHE40, AR, DPF2, GATAD2B, EGLN2, ATF7, IKZF2, NOTCH3, BRD4, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
Tools:
- Assay
