- Basic information
- CohesinDB ID: CDBP00414319
- Locus: chr21-19759933-19760204
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Data sourse: GSE206145, GSE111913, GSE67783
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Cell type: RPE, RT-112, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
20% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"9_Het": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, TRIM25, SMC1A, POU5F1, MYCN, ZFX, XBP1, ZBTB48, WT1, TET2, ERG, RELA, OGG1, RAD21, SP140, GRHL3, HIF1A, CBFB, STAT3, TAL1, TP63, TRIM28, ESR1, SETDB1, CTCF, AR, RXR, REST, HEXIM1, FLI1, HSF1, HNRNPLL, BRD4, MAZ, AATF, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops