- Basic information
- CohesinDB ID: CDBP00414326
- Locus: chr21-19782108-19782947
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Data sourse: ENCSR000BLD, GSE67783, GSE105028, ENCSR000ECE, GSE83726, ENCSR703TNG, GSE25021, GSE116344, GSE97394
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Cell type: MCF-7, H1-hESC, RH4, H9-hESC, HSPC, HUES64
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
20% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 70%,
"9_Het": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, GATA6, CREBBP, FOS, AR, TEAD1, EZH2phosphoT487, SMARCA4, TFAP2C, ZFX, RAD21, ESR1, DUX4, FOXA1, GATA3, CTCF, ZNF143, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 16
- Related genes and loops