- Basic information
- CohesinDB ID: CDBP00414327
- Locus: chr21-19795241-19795761
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
20% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"9_Het": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, POU2F2, MYCN, SOX2, ZFX, ZBTB48, WT1, ZKSCAN1, RELA, OGG1, MYC, CDK6, SP140, HIF1A, ZNF143, NEUROG2, EZH2, ESR1, BMPR1A, CTCF, AR, AATF, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 21
- Related genes and loops
- Related gene:
- Related loop:
chr21:19500000-19525000~~chr21:19775000-19800000,
chr21:19575000-19600000~~chr21:19775000-19800000,
chr21:19600000-19625000~~chr21:19775000-19800000,
chr21:19775000-19800000~~chr21:19875000-19900000,
chr21:19775000-19800000~~chr21:20150000-20175000,
chr21:19775000-19800000~~chr21:20900000-20925000,
chr21:19800000-19825000~~chr21:19900000-19925000,
chr21:19800000-19825000~~chr21:20025000-20050000,
chr21:19800000-19825000~~chr21:20875000-20900000,
chr21:19800000-19825000~~chr21:22625000-22650000,