- Basic information
- CohesinDB ID: CDBP00414328
- Locus: chr21-19804161-19804304
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
20% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 93%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TOP2A, NME2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
- Related loop:
chr21:19500000-19525000~~chr21:19775000-19800000,
chr21:19575000-19600000~~chr21:19775000-19800000,
chr21:19600000-19625000~~chr21:19775000-19800000,
chr21:19775000-19800000~~chr21:19875000-19900000,
chr21:19775000-19800000~~chr21:20150000-20175000,
chr21:19775000-19800000~~chr21:20900000-20925000,
chr21:19800000-19825000~~chr21:19900000-19925000,
chr21:19800000-19825000~~chr21:20025000-20050000,
chr21:19800000-19825000~~chr21:20875000-20900000,
chr21:19800000-19825000~~chr21:22625000-22650000,