- Basic information
- CohesinDB ID: CDBP00414333
- Locus: chr21-19850018-19850507
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Data sourse: GSE62063, GSE73207
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Cell type: TF-1, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
20% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 93%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOSL1, CBFA2T2, LDB1, MTA2, ERG, AHR, RUNX2, NFIC, SMARCA4, ARID1B, ISL1, GRHL3, HMBOX1, SMARCE1, CBFA2T3, TAL1, GATA1, HAND2, NR2F2, CEBPD, MYB, PML, TRIM28, LMO2, NCOA1, STAT5A, KLF16, TCF12, BCL11A, E4F1, EP300, DPF2, HDAC2, GATA2, ZBTB7A, REST, TRIM24, NCOR1, TEAD4, CC2D1A
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops