- Basic information
- CohesinDB ID: CDBP00414334
- Locus: chr21-19853056-19853543
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Data sourse: GSE116868, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC, MB157
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
20% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 70%,
"9_Het": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, NANOG, SMC1A, CHD8, BCL6, ZNF263, MYCN, CRY1, KDM4C, ZFX, NME2, MEIS2, XBP1, ZBTB48, WT1, ZSCAN5A, HINFP, ZNF534, TET2, TBL1X, MAFF, PBX2, PRDM10, RELA, PBX1, ASCL1, OGG1, ATF3, MYC, SMARCA4, ZBTB5, SP140, GRHL3, HIF1A, ARNT, CBFB, STAT3, MAX, TP63, ZNF143, IKZF1, KLF4, CEBPB, NCOA3, MYB, EZH2, PKNOX1, KLF9, SETDB1, CTCF, JUN, AR, DPF2, ATF1, RXR, HSF1, NOTCH3, BRD4, JUND, TCF3, E2F1, MAZ, HCFC1R1, AATF, SMC3, ZNF316, GTF2F1, STAG1, CC2D1A
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops