- Basic information
- CohesinDB ID: CDBP00414339
- Locus: chr21-19879333-19879630
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE67783, GSE86191
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Cell type: RPE, Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
20% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 94%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZBTB48, TRP47, ZBTB33
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
- Related loop:
chr21:18500000-18525000~~chr21:19875000-19900000,
chr21:18525000-18550000~~chr21:19875000-19900000,
chr21:18825000-18850000~~chr21:19875000-19900000,
chr21:19375000-19400000~~chr21:19875000-19900000,
chr21:19600000-19625000~~chr21:19875000-19900000,
chr21:19675000-19700000~~chr21:19875000-19900000,
chr21:19750000-19775000~~chr21:19875000-19900000,
chr21:19775000-19800000~~chr21:19875000-19900000,
chr21:19875000-19900000~~chr21:20000000-20025000,
chr21:19875000-19900000~~chr21:20750000-20775000,