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Basic information

CohesinDB ID: CDBP00414344

Locus: chr21-19899843-19901075

Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT, GSE86191

Cell type: K-562, Fibroblast, HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 20% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 69%, "9_Het": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, TRP47, CHD8, CBX1, CBX3, MYCN, AGO1, POU5F1, ZFX, XBP1, WT1, ZSCAN5A, KDM4B, ZBTB48, TET2, RBFOX2, TBP, PRDM10, ERG, YY1, RELA, ATF3, MYC, ETS1, SMARCA4, SP140, ZFP36, GRHL3, MAF1, SUPT5H, NFE2, NFRKB, NCOA3, TEAD1, KDM6B, EZH2, TAF7, ESR1, OCA2, SETDB1, PHF8, CTCF, AR, GATA6, TAF1, HSF1, NOTCH3, BRD4, JUND, MAZ, AATF, SMC3, STAG1, TFAP2C

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 22

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00414344