- Basic information
- CohesinDB ID: CDBP00414346
- Locus: chr21-19922189-19922517
-
Data sourse: ENCSR000BLD, GSE25021, GSE105028, ENCSR000ECE, GSE97394
-
Cell type: MCF-7, H1-hESC, HUES64, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
20% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 89%,
"9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXA2, DUX4, FOXA1, ERG, RELA, ATF3, RAD21, ATF4, MAX, ZNF10, GATA1, IKZF1, CEBPG, CEBPB, NR3C1, NR2F1, ESR1, GRHL2, CTCF, SPI1, AR, DPF2, RAD51, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 10
- Related genes and loops