- Basic information
- CohesinDB ID: CDBP00414357
- Locus: chr21-20019174-20019452
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Data sourse: GSE206145-NatGen2015, GSE67783
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Cell type: Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: False
- Compartment:
17% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 90%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, TOP2A, ZBTB48, ZBTB33, ERG, YY1, RELA, ZNF384, OGG1, CHD7, ARNT, HIF1A, OTX2, GABPA, TAL1, MAX, MITF, HAND2, CEBPB, TRIM28, SETDB1, USF2, USF1, E2F6, RAD51, BRD4
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
- Related loop:
chr21:18950000-18975000~~chr21:20000000-20025000,
chr21:19300000-19325000~~chr21:20000000-20025000,
chr21:19375000-19400000~~chr21:20000000-20025000,
chr21:19550000-19575000~~chr21:20000000-20025000,
chr21:19600000-19625000~~chr21:20000000-20025000,
chr21:19725000-19750000~~chr21:20000000-20025000,
chr21:19875000-19900000~~chr21:20000000-20025000,
chr21:19900000-19925000~~chr21:20000000-20025000,
chr21:20000000-20025000~~chr21:20175000-20200000,
chr21:20000000-20025000~~chr21:20200000-20225000,
chr21:20000000-20025000~~chr21:20225000-20250000,
chr21:20000000-20025000~~chr21:20300000-20325000,
chr21:20000000-20025000~~chr21:20425000-20450000,
chr21:20000000-20025000~~chr21:20625000-20650000,
chr21:20000000-20025000~~chr21:20850000-20875000,