- Basic information
- CohesinDB ID: CDBP00414358
- Locus: chr21-20030405-20030847
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Data sourse: GSE116868, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC, MB157
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
17% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 75%,
"9_Het": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, MYCN, ZFX, HSF1, SP140, GRHL3, ZBTB48, ZSCAN5A, BRD4, WT1, XBP1, AATF, STAT3, SMC3, CTCF, STAG1
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000154646,
- Related loop:
chr21:18275000-18300000~~chr21:20025000-20050000,
chr21:18500000-18525000~~chr21:20025000-20050000,
chr21:18950000-18975000~~chr21:20025000-20050000,
chr21:19300000-19325000~~chr21:20025000-20050000,
chr21:19600000-19625000~~chr21:20025000-20050000,
chr21:19800000-19825000~~chr21:20025000-20050000,
chr21:19900000-19925000~~chr21:20025000-20050000,
chr21:20025000-20050000~~chr21:20250000-20275000,
chr21:20025000-20050000~~chr21:20275000-20300000,
chr21:20025000-20050000~~chr21:20425000-20450000,
chr21:20025000-20050000~~chr21:20525000-20550000,
chr21:20025000-20050000~~chr21:20550000-20575000,
chr21:20025000-20050000~~chr21:20875000-20900000,
chr21:20025000-20050000~~chr21:20950000-20975000,