- Basic information
- CohesinDB ID: CDBP00414363
- Locus: chr21-20039746-20040112
-
Data sourse: GSE206145, GSE110061, GSE67783
-
Cell type: RPE, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21,SA1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
17% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 86%,
"9_Het": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZBTB48, SP140, ZBTB33, XBP1
- Target gene symbol (double-evidenced CRMs): TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000154646,
- Related loop:
chr21:18275000-18300000~~chr21:20025000-20050000,
chr21:18500000-18525000~~chr21:20025000-20050000,
chr21:18950000-18975000~~chr21:20025000-20050000,
chr21:19300000-19325000~~chr21:20025000-20050000,
chr21:19321159-19323544~~chr21:20040110-20041964,
chr21:19321624-19323201~~chr21:20040107-20041944,
chr21:19507043-19508857~~chr21:20040107-20041944,
chr21:19600000-19625000~~chr21:20025000-20050000,
chr21:19800000-19825000~~chr21:20025000-20050000,
chr21:19900000-19925000~~chr21:20025000-20050000,
chr21:20025000-20050000~~chr21:20250000-20275000,
chr21:20025000-20050000~~chr21:20275000-20300000,
chr21:20025000-20050000~~chr21:20425000-20450000,
chr21:20025000-20050000~~chr21:20525000-20550000,
chr21:20025000-20050000~~chr21:20550000-20575000,
chr21:20025000-20050000~~chr21:20875000-20900000,
chr21:20025000-20050000~~chr21:20950000-20975000,