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Basic information

CohesinDB ID: CDBP00414365

Locus: chr21-20044956-20045567

Data sourse: GSE67783, ENCSR153HNT, GSE86191

Cell type: K-562, HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 17% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 67%, "9_Het": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU2F2, SMC1A, CHD8, TBL1X, MYCN, POU5F1, CRY1, CREM, ZFX, KDM4C, XBP1, EBF1, ZBTB48, WT1, TOP2A, TEAD4, SIN3A, TET2, PBX2, CDK9, YY1, RELA, ATF3, MYC, ETS1, PRDM1, ARNT, HIF1A, SP140, GRHL3, CBX3, SMC3, GABPA, STAT3, TAL1, CBFA2T3, MAX, GATA1, NR2F6, ZEB1, NR2F2, CREB1, NR2F1, TP53, OCA2, ESR1, SETDB1, STAT5A, CTCF, TCF12, ARRB1, SPI1, BHLHE40, AR, CBFA2T2, DPF2, HDAC2, GATA2, ZBTB7A, EGR1, NCOR1, NOTCH3, CLOCK, HCFC1R1, AATF, NCOA2, STAG1, TFAP2C

Target gene symbol (double-evidenced CRMs): TMPRSS15

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 9

Related genes and loops

Related gene: ENSG00000154646,

eachgene

Deatailed information for cohesin site CDBP00414365