- Basic information
- CohesinDB ID: CDBP00414378
- Locus: chr21-20170223-20170597
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Data sourse: ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
17% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, CEBPA, POU5F1, NME2, FOXA1, ZBTB33, ZNF823, HOXB13, ERG, YY1, RELA, ONECUT1, SMARCA4, RAD21, GRHL3, ARNT, RXRA, TAL1, MAX, MED1, CEBPB, TRIM28, SETDB1, SP1, HNF4A, REST, ZNF24, PDX1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops