- Basic information
- CohesinDB ID: CDBP00414381
- Locus: chr21-20197837-20197899
-
Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
17% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, AR, CEBPB, NCOA3, MCM5, POU5F1, TRIM28, XBP1, GRHL3, BRD4, DUX4, SETDB1, PHOX2B, CTCF, SPI1, ERG
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
- Related loop:
chr21:19375000-19400000~~chr21:20200000-20225000,
chr21:20000000-20025000~~chr21:20175000-20200000,
chr21:20000000-20025000~~chr21:20200000-20225000,
chr21:20075000-20100000~~chr21:20175000-20200000,
chr21:20075000-20100000~~chr21:20200000-20225000,
chr21:20100000-20125000~~chr21:20200000-20225000,
chr21:20175000-20200000~~chr21:20300000-20325000,
chr21:20175000-20200000~~chr21:20525000-20550000,
chr21:20175000-20200000~~chr21:20625000-20650000,
chr21:20175000-20200000~~chr21:20775000-20800000,
chr21:20200000-20225000~~chr21:20300000-20325000,
chr21:20200000-20225000~~chr21:20400000-20425000,
chr21:20200000-20225000~~chr21:20425000-20450000,
chr21:20200000-20225000~~chr21:20500000-20525000,
chr21:20200000-20225000~~chr21:20550000-20575000,
chr21:20200000-20225000~~chr21:20950000-20975000,